STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmBCOGs: COG0227 Ribosomal protein L28; InterPro IPR001383; KEGG: pgn:PGN_1891 50S ribosomal protein L28; PFAM: Ribosomal protein L28; SPTR: Ribosomal protein L28; TIGRFAM: Ribosomal protein L28; IMG reference gene:2504825590; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (82 aa)    
Predicted Functional Partners:
rpmG
HAMAP: Ribosomal protein L33; InterPro IPR001705; KEGG: bth:BT_0915 50S ribosomal protein L33; PFAM: Ribosomal protein L33; SPTR: Ribosomal protein L33; TIGRFAM: Ribosomal protein L33; IMG reference gene:2504825591; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.998
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 0.995
rpmE2
COGs: COG0254 Ribosomal protein L31; InterPro IPR002150; KEGG: pdi:BDI_1945 50S ribosomal protein L31 type B; PFAM: Ribosomal protein L31; SPTR: Ribosomal protein L31; TIGRFAM: Ribosomal protein L31; IMG reference gene:2504824443; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31.
 
 
 0.995
rpmF
COGs: COG0333 Ribosomal protein L32; HAMAP: Ribosomal protein L32p; InterPro IPR002677; KEGG: pgn:PGN_0188 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; SPTR: Ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; IMG reference gene:2504824562; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.995
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.995
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.995
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.995
rpsI
COGs: COG0103 Ribosomal protein S9; InterPro IPR000754; KEGG: pgn:PGN_1589 30S ribosomal protein S9; PFAM: Ribosomal protein S9; SPTR: Ribosomal protein S9; IMG reference gene:2504824137; PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.994
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.994
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.994
Your Current Organism:
Porphyromonas asaccharolytica
NCBI taxonomy Id: 879243
Other names: P. asaccharolytica DSM 20707, Porphyromonas asaccharolytica ATCC 25260, Porphyromonas asaccharolytica CCUG 7834, Porphyromonas asaccharolytica DSM 20707, Porphyromonas asaccharolytica JCM 6326, Porphyromonas asaccharolytica str. DSM 20707, Porphyromonas asaccharolytica strain DSM 20707
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