Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rpmGHAMAP: Ribosomal protein L33; InterPro IPR001705; KEGG: bth:BT_0915 50S ribosomal protein L33; PFAM: Ribosomal protein L33; SPTR: Ribosomal protein L33; TIGRFAM: Ribosomal protein L33; IMG reference gene:2504825591; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family. (62 aa)    
Predicted Functional Partners:
rpmB
COGs: COG0227 Ribosomal protein L28; InterPro IPR001383; KEGG: pgn:PGN_1891 50S ribosomal protein L28; PFAM: Ribosomal protein L28; SPTR: Ribosomal protein L28; TIGRFAM: Ribosomal protein L28; IMG reference gene:2504825590; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.997
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.990
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.989
rpmD
COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR000517:IPR005996; KEGG: pgn:PGN_1850 50S ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e, conserved region; SPTR: Ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; IMG reference gene:2504824231; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle.
   
 
 0.988
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 
 0.988
rpmA
COGs: COG0211 Ribosomal protein L27; HAMAP: Ribosomal protein L27; InterPro IPR001684; KEGG: pgn:PGN_1647 50S ribosomal protein L27; PFAM: Ribosomal protein L27; SPTR: Ribosomal protein L27; TIGRFAM: Ribosomal protein L27; IMG reference gene:2504824965; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.988
rpsI
COGs: COG0103 Ribosomal protein S9; InterPro IPR000754; KEGG: pgn:PGN_1589 30S ribosomal protein S9; PFAM: Ribosomal protein S9; SPTR: Ribosomal protein S9; IMG reference gene:2504824137; PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.987
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
 
 0.987
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.987
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
  
 
 0.987
Your Current Organism:
Porphyromonas asaccharolytica
NCBI taxonomy Id: 879243
Other names: P. asaccharolytica DSM 20707, Porphyromonas asaccharolytica ATCC 25260, Porphyromonas asaccharolytica CCUG 7834, Porphyromonas asaccharolytica DSM 20707, Porphyromonas asaccharolytica JCM 6326, Porphyromonas asaccharolytica str. DSM 20707, Porphyromonas asaccharolytica strain DSM 20707
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