shn_00090 protein (Shinella sp. HZN7) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

shn_00090

DUF1049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)

Predicted Functional Partners:

shn_09450

0.765

shn_14885

0.763

shn_00755

0.752

shn_08435

0.733

shn_06130

0.729

shn_05435

0.724

shn_04235

0.696

shn_00075

0.687

shn_09915

0.670

ihfB

0.659

Your Current Organism:

Shinella sp. HZN7

NCBI taxonomy Id: 879274
Other names: S. sp. HZN7

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ihfB	shn_00075	shn_00085	shn_00075	Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.	LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
ihfB	shn_00090	shn_00085	shn_00090	Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.	DUF1049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
shn_00075	ihfB	shn_00075	shn_00085	LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.	0.459
shn_00075	shn_00090	shn_00075	shn_00090	LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF1049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
shn_00075	shn_00755	shn_00075	shn_00755	LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
shn_00075	shn_08435	shn_00075	shn_08435	LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
shn_00075	shn_09450	shn_00075	shn_09450	LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502
shn_00075	shn_09915	shn_00075	shn_09915	LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
shn_00075	shn_14885	shn_00075	shn_14885	LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
shn_00090	ihfB	shn_00090	shn_00085	DUF1049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.	0.659
shn_00090	shn_00075	shn_00090	shn_00075	DUF1049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
shn_00090	shn_00755	shn_00090	shn_00755	DUF1049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
shn_00090	shn_04235	shn_00090	shn_04235	DUF1049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Invasion associated locus B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
shn_00090	shn_05435	shn_00090	shn_05435	DUF1049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
shn_00090	shn_06130	shn_00090	shn_06130	DUF1049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TIGR02301 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.729
shn_00090	shn_08435	shn_00090	shn_08435	DUF1049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
shn_00090	shn_09450	shn_00090	shn_09450	DUF1049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
shn_00090	shn_09915	shn_00090	shn_09915	DUF1049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
shn_00090	shn_14885	shn_00090	shn_14885	DUF1049 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
shn_00755	shn_00075	shn_00755	shn_00075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533