shn_01205 protein (Shinella sp. HZN7) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

shn_01205

Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)

Predicted Functional Partners:

shn_05225

0.774

shn_18610

0.773

shn_22335

0.771

shn_01200

0.655

shn_11030

0.563

dnaX

0.480

Your Current Organism:

Shinella sp. HZN7

NCBI taxonomy Id: 879274
Other names: S. sp. HZN7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dnaX	shn_01200	shn_01195	shn_01200	DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.855
dnaX	shn_01205	shn_01195	shn_01205	DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
shn_01200	dnaX	shn_01200	shn_01195	Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.855
shn_01200	shn_01205	shn_01200	shn_01205	Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
shn_01205	dnaX	shn_01205	shn_01195	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.480
shn_01205	shn_01200	shn_01205	shn_01200	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.655
shn_01205	shn_05225	shn_01205	shn_05225	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Threonine transporter RhtB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
shn_01205	shn_11030	shn_01205	shn_11030	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
shn_01205	shn_18610	shn_01205	shn_18610	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
shn_01205	shn_22335	shn_01205	shn_22335	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
shn_05225	shn_01205	shn_05225	shn_01205	Threonine transporter RhtB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
shn_05225	shn_11030	shn_05225	shn_11030	Threonine transporter RhtB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
shn_11030	shn_01205	shn_11030	shn_01205	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
shn_11030	shn_05225	shn_11030	shn_05225	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Threonine transporter RhtB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
shn_18610	shn_01205	shn_18610	shn_01205	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
shn_22335	shn_01205	shn_22335	shn_01205	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771