STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shn_03210Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)    
Predicted Functional Partners:
shn_09920
5,6-dimethylbenzimidazole synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.663
shn_17005
Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.659
shn_03640
Riboflavin biosynthesis protein RibF; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family.
    
 0.632
shn_13330
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.505
shn_14760
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.505
shn_03205
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.490
shn_16275
Pyoverdin chromophore biosynthetic protein pvcC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.428
shn_03215
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
shn_03220
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
shn_03225
Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.