shn_03995 protein (Shinella sp. HZN7) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

shn_03995

Flagellar protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (773 aa)

Predicted Functional Partners:

flgB

0.942

shn_01560

0.937

fliE

0.937

shn_01755

0.934

shn_01630

0.931

shn_01710

0.924

shn_01525

0.909

shn_01610

0.903

shn_01595

0.890

shn_01715

0.890

Your Current Organism:

Shinella sp. HZN7

NCBI taxonomy Id: 879274
Other names: S. sp. HZN7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
flgB	fliE	shn_01590	shn_01600	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
flgB	shn_01525	shn_01590	shn_01525	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.992
flgB	shn_01560	shn_01590	shn_01560	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
flgB	shn_01595	shn_01590	shn_01595	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar basal body rod protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	0.997
flgB	shn_01610	shn_01590	shn_01610	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.	0.993
flgB	shn_01630	shn_01590	shn_01630	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar basal body protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.992
flgB	shn_01710	shn_01590	shn_01710	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar hook-associated protein FlgK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
flgB	shn_01715	shn_01590	shn_01715	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar biosynthesis protein FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.957
flgB	shn_01755	shn_01590	shn_01755	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Rod-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
flgB	shn_03995	shn_01590	shn_03995	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	Flagellar protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
fliE	flgB	shn_01600	shn_01590	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.998
fliE	shn_01525	shn_01600	shn_01525	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.983
fliE	shn_01560	shn_01600	shn_01560	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
fliE	shn_01595	shn_01600	shn_01595	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar basal body rod protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	0.995
fliE	shn_01610	shn_01600	shn_01610	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.	0.987
fliE	shn_01630	shn_01600	shn_01630	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar basal body protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.987
fliE	shn_01710	shn_01600	shn_01710	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar hook-associated protein FlgK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
fliE	shn_01715	shn_01600	shn_01715	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis protein FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.934
fliE	shn_01755	shn_01600	shn_01755	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rod-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
fliE	shn_03995	shn_01600	shn_03995	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937