STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shn_04090Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)    
Predicted Functional Partners:
shn_04095
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.943
shn_04075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.847
shn_04080
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.821
shn_04085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.692
shn_06005
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.564
shn_04100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family.
       0.496
shn_13335
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.458
shn_10515
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.437
shn_03855
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.423
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.