shn_04155 protein (Shinella sp. HZN7) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

shn_04155

Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)

Predicted Functional Partners:

shn_04150

0.999

shn_04160

0.999

shn_04145

0.778

shn_12125

0.763

shn_02690

0.708

shn_20440

0.708

truA

0.707

shn_10150

0.701

dppD

0.694

shn_02935

0.694

Your Current Organism:

Shinella sp. HZN7

NCBI taxonomy Id: 879274
Other names: S. sp. HZN7

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dppD	shn_04155	shn_02010	shn_04155	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.694
dppD	shn_04160	shn_02010	shn_04160	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
dppD	shn_12125	shn_02010	shn_12125	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.454
shn_02690	shn_04155	shn_02690	shn_04155	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
shn_02690	shn_04160	shn_02690	shn_04160	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
shn_02690	shn_10150	shn_02690	shn_10150	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
shn_02690	shn_12125	shn_02690	shn_12125	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.507
shn_02690	shn_20440	shn_02690	shn_20440	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
shn_02935	shn_04155	shn_02935	shn_04155	With GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.694
shn_02935	shn_12125	shn_02935	shn_12125	With GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.503
shn_04145	shn_04150	shn_04145	shn_04150	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	BioY family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
shn_04145	shn_04155	shn_04145	shn_04155	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
shn_04145	shn_04160	shn_04145	shn_04160	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
shn_04150	shn_04145	shn_04150	shn_04145	BioY family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
shn_04150	shn_04155	shn_04150	shn_04155	BioY family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
shn_04150	shn_04160	shn_04150	shn_04160	BioY family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
shn_04155	dppD	shn_04155	shn_02010	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.694
shn_04155	shn_02690	shn_04155	shn_02690	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
shn_04155	shn_02935	shn_04155	shn_02935	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	With GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.694
shn_04155	shn_04145	shn_04155	shn_04145	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778