STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shn_07780Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)    
Predicted Functional Partners:
sseA
3-mercaptopyruvate sulfurtransferase; Catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.977
shn_19545
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.666
shn_07775
Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.529
shn_07795
Cysteine synthase A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.524
shn_09110
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.501
shn_20790
Thiamine biosynthesis protein ThiF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.500
shn_21135
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
shn_13185
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.480
shn_07790
Ala-tRNA(Pro) hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.470
shn_10925
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.444
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.