STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shn_10265Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)    
Predicted Functional Partners:
shn_10260
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.989
shn_10280
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.846
shn_10275
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.825
shn_10285
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.819
shn_10270
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
     0.727
shn_14075
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.727
shn_14080
Trehalose utilization protein ThuA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.708
shn_15750
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.667
shn_17455
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.649
shn_17435
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.599
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.