STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shn_11310Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)    
Predicted Functional Partners:
shn_11315
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.922
shn_11320
N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.911
shn_11305
N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.878
shn_11295
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.853
shn_11290
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.768
shn_11285
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.749
shn_11280
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.746
shn_11300
N-acetylmuramic acid 6-phosphate etherase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.740
shn_16825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.692
shn_11325
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.516
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.