STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shn_11480Baseplate J family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)    
Predicted Functional Partners:
shn_11475
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.953
shn_13635
Baseplate; Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.952
shn_11495
Mu P family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.948
shn_03350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.931
shn_13685
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.926
shn_11500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.918
shn_11505
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.910
shn_11520
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.881
shn_11535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.849
shn_11470
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.840
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.