shn_11830 protein (Shinella sp. HZN7) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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Experiments

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[Homology]

Score

shn_11830

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)

Predicted Functional Partners:

shn_11860

0.615

shn_12045

0.583

shn_16795

0.539

shn_12035

0.533

shn_11825

0.529

shn_01580

0.485

fliE

0.484

shn_19820

0.483

shn_01560

0.482

shn_09545

0.453

Your Current Organism:

Shinella sp. HZN7

NCBI taxonomy Id: 879274
Other names: S. sp. HZN7

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fliE	shn_01560	shn_01600	shn_01560	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
fliE	shn_01580	shn_01600	shn_01580	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar protein export ATPase FliI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
fliE	shn_11830	shn_01600	shn_11830	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
shn_01560	fliE	shn_01560	shn_01600	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
shn_01560	shn_01580	shn_01560	shn_01580	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar protein export ATPase FliI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
shn_01560	shn_11830	shn_01560	shn_11830	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
shn_01580	fliE	shn_01580	shn_01600	Flagellar protein export ATPase FliI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
shn_01580	shn_01560	shn_01580	shn_01560	Flagellar protein export ATPase FliI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
shn_01580	shn_11830	shn_01580	shn_11830	Flagellar protein export ATPase FliI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
shn_09545	shn_11830	shn_09545	shn_11830	Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
shn_09545	shn_16795	shn_09545	shn_16795	Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
shn_11825	shn_11830	shn_11825	shn_11830	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
shn_11830	fliE	shn_11830	shn_01600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
shn_11830	shn_01560	shn_11830	shn_01560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
shn_11830	shn_01580	shn_11830	shn_01580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar protein export ATPase FliI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
shn_11830	shn_09545	shn_11830	shn_09545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.453
shn_11830	shn_11825	shn_11830	shn_11825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
shn_11830	shn_11860	shn_11830	shn_11860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
shn_11830	shn_12035	shn_11830	shn_12035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
shn_11830	shn_12045	shn_11830	shn_12045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583