STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shn_14590Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)    
Predicted Functional Partners:
shn_14620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     0.784
shn_14595
Acyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.746
shn_09760
Pyruvate dehydrogenase complex E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 0.704
shn_14600
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.674
shn_17005
Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.672
shn_14645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.663
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.512
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.512
shn_14700
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.512
shn_21640
4-hydroxybenzoate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.479
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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