STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shn_15375Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (321 aa)    
Predicted Functional Partners:
shn_07465
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.879
shn_04460
Protease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    
0.864
shn_04890
RTX toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.808
shn_04885
Protease/lipase ABC transporter permease/ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.772
shn_10670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    
0.637
shn_15370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.610
shn_01055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.588
shn_10190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    
0.507
shn_06975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    
0.462
shn_15365
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.424
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.