STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shn_15470Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)    
Predicted Functional Partners:
shn_12355
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.774
shn_12360
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.750
shn_12365
Glutamine cyclotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.750
shn_15475
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.698
shn_15465
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.551
shn_02675
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.488
shn_08780
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.486
shn_04075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.419
shn_02670
Short-chain dehydrogenase/reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.416
shn_15460
Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.405
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.