Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
shn_16640Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)    
Predicted Functional Partners:
shn_16630
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
shn_16625
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.989
shn_16645
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.986
shn_16635
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.981
shn_03130
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.973
shn_12125
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 0.956
shn_21260
Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.920
shn_02000
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.905
shn_02940
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.900
shn_03190
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.900
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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