shn_16770 protein (Shinella sp. HZN7) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

shn_16770

Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)

Predicted Functional Partners:

shn_16765

0.995

potA-4

0.989

shn_02760

0.987

shn_01885

0.968

shn_17215

0.966

potA-5

0.963

shn_11220

0.960

shn_11215

0.959

fbpC

0.956

potA-3

0.952

Your Current Organism:

Shinella sp. HZN7

NCBI taxonomy Id: 879274
Other names: S. sp. HZN7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fbpC	potA-3	shn_12010	shn_10750	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.405
fbpC	potA-4	shn_12010	shn_16775	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.403
fbpC	potA-5	shn_12010	shn_17225	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.419
fbpC	shn_01885	shn_12010	shn_01885	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
fbpC	shn_02760	shn_12010	shn_02760	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
fbpC	shn_11215	shn_12010	shn_11215	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
fbpC	shn_11220	shn_12010	shn_11220	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.400
fbpC	shn_16765	shn_12010	shn_16765	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828
fbpC	shn_16770	shn_12010	shn_16770	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
fbpC	shn_17215	shn_12010	shn_17215	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
potA-3	fbpC	shn_10750	shn_12010	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.405
potA-3	potA-4	shn_10750	shn_16775	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.418
potA-3	potA-5	shn_10750	shn_17225	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.402
potA-3	shn_01885	shn_10750	shn_01885	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
potA-3	shn_02760	shn_10750	shn_02760	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
potA-3	shn_11215	shn_10750	shn_11215	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
potA-3	shn_11220	shn_10750	shn_11220	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.402
potA-3	shn_16765	shn_10750	shn_16765	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
potA-3	shn_16770	shn_10750	shn_16770	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
potA-3	shn_17215	shn_10750	shn_17215	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808