shn_17000 protein (Shinella sp. HZN7) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

shn_17000

Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)

Predicted Functional Partners:

shn_17005

0.968

shn_14490

0.927

shn_02780

0.495

shn_05310

0.495

Your Current Organism:

Shinella sp. HZN7

NCBI taxonomy Id: 879274
Other names: S. sp. HZN7

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
shn_02780	shn_17000	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
shn_05310	shn_14490	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ring-cleaving dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
shn_05310	shn_17000	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
shn_05310	shn_17005	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
shn_14490	shn_05310	Ring-cleaving dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
shn_14490	shn_17000	Ring-cleaving dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
shn_17000	shn_02780	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
shn_17000	shn_05310	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
shn_17000	shn_14490	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ring-cleaving dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
shn_17000	shn_17005	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
shn_17005	shn_05310	Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
shn_17005	shn_17000	Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968