STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shn_18130Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)    
Predicted Functional Partners:
shn_18120
CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.933
shn_18125
Conjugal transfer protein TraG; Type IV secretion VirD4 coupling protein family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.927
shn_18140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.868
shn_18145
S26 family signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.855
shn_18150
Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.852
shn_18175
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.852
shn_21925
Peptidase S26; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.847
shn_18170
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.840
shn_18105
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.839
shn_18095
P-type conjugative transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.835
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.