shn_19230 protein (Shinella sp. HZN7) - STRING interaction network

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

shn_19230

Thiamine ABC transporter substrate binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)

Predicted Functional Partners:

shn_19235

0.997

thiQ

0.994

shn_10700

0.662

shn_01900

0.582

shn_14550

0.582

shn_19245

0.486

shn_19225

0.418

Your Current Organism:

Shinella sp. HZN7

NCBI taxonomy Id: 879274
Other names: S. sp. HZN7

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
shn_01900	shn_10700	shn_01900	shn_10700	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
shn_01900	shn_14550	shn_01900	shn_14550	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
shn_01900	shn_19230	shn_01900	shn_19230	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine ABC transporter substrate binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
shn_01900	thiQ	shn_01900	shn_19240	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.	0.591
shn_10700	shn_01900	shn_10700	shn_01900	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
shn_10700	shn_14550	shn_10700	shn_14550	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
shn_10700	shn_19230	shn_10700	shn_19230	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine ABC transporter substrate binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
shn_10700	thiQ	shn_10700	shn_19240	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.	0.591
shn_14550	shn_01900	shn_14550	shn_01900	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
shn_14550	shn_10700	shn_14550	shn_10700	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
shn_14550	shn_19230	shn_14550	shn_19230	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine ABC transporter substrate binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
shn_14550	thiQ	shn_14550	shn_19240	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.	0.591
shn_19225	shn_19230	shn_19225	shn_19230	Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine ABC transporter substrate binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
shn_19225	shn_19235	shn_19225	shn_19235	Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine/thiamine pyrophosphate ABC transporter, permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
shn_19225	thiQ	shn_19225	shn_19240	Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.	0.418
shn_19230	shn_01900	shn_19230	shn_01900	Thiamine ABC transporter substrate binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
shn_19230	shn_10700	shn_19230	shn_10700	Thiamine ABC transporter substrate binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
shn_19230	shn_14550	shn_19230	shn_14550	Thiamine ABC transporter substrate binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
shn_19230	shn_19225	shn_19230	shn_19225	Thiamine ABC transporter substrate binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
shn_19230	shn_19235	shn_19230	shn_19235	Thiamine ABC transporter substrate binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine/thiamine pyrophosphate ABC transporter, permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997