shn_20395 protein (Shinella sp. HZN7) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

shn_20395

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)

Predicted Functional Partners:

shn_20400

0.723

arcA

0.518

shn_20405

0.511

shn_20410

0.509

shn_20420

0.478

shn_00795

0.422

shn_00515

0.418

shn_21790

0.415

shn_05315

0.404

Your Current Organism:

Shinella sp. HZN7

NCBI taxonomy Id: 879274
Other names: S. sp. HZN7

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
arcA	shn_20395	shn_20415	shn_20395	Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
arcA	shn_20400	shn_20415	shn_20400	Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
arcA	shn_20405	shn_20415	shn_20405	Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbamate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbamate kinase family.	0.994
arcA	shn_20410	shn_20415	shn_20410	Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.999
arcA	shn_20420	shn_20415	shn_20420	Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
shn_00515	shn_05315	shn_00515	shn_05315	Polyphosphate kinase 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
shn_00515	shn_20395	shn_00515	shn_20395	Polyphosphate kinase 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
shn_00795	shn_20395	shn_00795	shn_20395	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
shn_05315	shn_00515	shn_05315	shn_00515	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyphosphate kinase 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
shn_05315	shn_20395	shn_05315	shn_20395	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
shn_20395	arcA	shn_20395	shn_20415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
shn_20395	shn_00515	shn_20395	shn_00515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyphosphate kinase 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
shn_20395	shn_00795	shn_20395	shn_00795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
shn_20395	shn_05315	shn_20395	shn_05315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
shn_20395	shn_20400	shn_20395	shn_20400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.723
shn_20395	shn_20405	shn_20395	shn_20405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbamate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbamate kinase family.	0.511
shn_20395	shn_20410	shn_20395	shn_20410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.509
shn_20395	shn_20420	shn_20395	shn_20420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
shn_20395	shn_21790	shn_20395	shn_21790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
shn_20400	arcA	shn_20400	shn_20415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514