STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shn_22015AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1098 aa)    
Predicted Functional Partners:
shn_22020
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.946
shn_22030
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.794
shn_22035
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
shn_22045
ATP-dependent endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.698
shn_22010
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
       0.482
shn_03395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.403
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.