STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EGC81787.1Phage portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537. (372 aa)    
Predicted Functional Partners:
EGC81900.1
Phage major capsid protein, HK97 family; Identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554.
 
 
 0.987
EGC81808.1
Phage DNA packaging protein; Identified by match to protein family HMM TIGR01560.
 
 
 0.966
clpP
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Identified by match to protein family HMM PF00574; Belongs to the peptidase S14 family.
 
  
 0.965
EGC81773.1
Putative phage head-tail adaptor; Identified by match to protein family HMM TIGR01563.
  
 
 0.939
EGC81872.1
Putative phage terminase, large subunit; Identified by match to protein family HMM PF03354.
 
   
 0.887
EGC81795.1
HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.
 
  
 0.854
EGC81840.1
Toxin secretion/phage lysis holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.
 
   
 0.844
dcm_2
DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; overlaps another CDS with the same product name; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.840
EGC81865.1
Phage tail tape measure protein, TP901 family; Identified by match to protein family HMM PF05017; match to protein family HMM TIGR01760.
  
  
 0.816
EGC81781.1
Hypothetical protein.
 
    0.813
Your Current Organism:
Anaerococcus prevotii ACS065VCol13
NCBI taxonomy Id: 879305
Other names: A. prevotii ACS-065-V-Col13, Anaerococcus prevotii ACS-065-V-Col13
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