STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EGC81683.1Transglycosylase associated protein; Identified by match to protein family HMM PF04226. (88 aa)    
Predicted Functional Partners:
EGC81844.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
    0.521
EGC81664.1
Putative sensory transduction protein RegX3; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
  
    0.518
EGC81692.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
  
    0.506
EGC81726.1
Peptidase, S41 family; Identified by match to protein family HMM PF03572.
       0.485
EGC81577.1
Conserved domain protein.
  
     0.473
EGC82630.1
Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.
     
 0.472
EGC82775.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.456
EGC82265.1
LytTr DNA-binding domain protein; Identified by match to protein family HMM PF04397.
   
    0.452
EGC81978.1
Serine-protein kinase RsbW family protein.
  
    0.414
rplY
Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
    0.406
Your Current Organism:
Anaerococcus prevotii ACS065VCol13
NCBI taxonomy Id: 879305
Other names: A. prevotii ACS-065-V-Col13, Anaerococcus prevotii ACS-065-V-Col13
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