STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS30251.1Aminopeptidase II. (409 aa)    
Predicted Functional Partners:
pepF
Oligoendopeptidase F.
 
   
 0.538
rpsB
Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
       0.491
EGS30856.1
Hydrolase, alpha/beta domain protein.
     
 0.426
EGS30381.1
Hydrolase, alpha/beta domain protein.
     
 0.426
EGS30086.1
Putative lysophospholipase.
     
 0.426
Your Current Organism:
Peptoniphilus sp. F0436
NCBI taxonomy Id: 879308
Other names: P. sp. oral taxon 375 str. F0436, Peptoniphilus sp. oral taxon 375 str. F0436
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.