STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0J0XMC0DEAD-domain-containing protein; Belongs to the DEAD box helicase family. (561 aa)    
Predicted Functional Partners:
A0A0J0XTZ2
Sas10 domain-containing protein.
   
 0.999
A0A0J0XVV5
WD40 repeat-like protein.
   
 0.993
A0A0J0XU59
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
 
 0.992
A0A0J0XYA6
ATP-dependent RNA helicase ROK1.
  
0.992
A0A0J1B9R4
Uncharacterized protein.
   
 0.991
A0A0J0XBS9
Nep1-domain-containing protein.
   
 0.990
A0A0J0XFG6
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.990
A0A0J1B8F6
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.990
A0A0J0XE13
CBF-domain-containing protein.
   
 0.989
A0A0J0XXJ1
ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family.
  
 
0.988
Your Current Organism:
Cutaneotrichosporon oleaginosum
NCBI taxonomy Id: 879819
Other names: ATCC 20509, C. oleaginosum, Cutaneotrichosporon oleaginosum (J.J. Zhou, S.O. Suh & Gujjari) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout, 2015, Trichosporon oleaginosum, Trichosporon oleaginosum J.J. Zhou, S.O. Suh & Gujjari, 2011, Trichosporon oleaginosus, Trichosporon sp. ATCC 20508, Trichosporon sp. ATCC 20509
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