STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0J1B1J2Putative ribosome biogenesis-related protein. (486 aa)    
Predicted Functional Partners:
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.965
A0A0J1B8W9
Putative mRNA export factor elf1.
   
   0.960
A0A0J0XF52
Noc2-domain-containing protein.
   
 
 0.953
A0A0J0XKE2
Ribosomal protein L1.
   
 
 0.939
A0A0J0XCT4
Putative WD-repeat protein.
   
 
 0.935
A0A0J0XT59
WD40 repeat-like protein.
   
  
0.931
A0A0J1AZY7
RNA helicase.
   
   0.930
A0A0J0XKE7
Putative ATP-dependent RNA helicase.
   
 
 0.929
A0A0J0XJ89
Brix-domain-containing protein.
   
    0.924
A0A0J0XTN9
Putative WD repeat protein.
   
  
 0.917
Your Current Organism:
Cutaneotrichosporon oleaginosum
NCBI taxonomy Id: 879819
Other names: ATCC 20509, C. oleaginosum, Cutaneotrichosporon oleaginosum (J.J. Zhou, S.O. Suh & Gujjari) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout, 2015, Trichosporon oleaginosum, Trichosporon oleaginosum J.J. Zhou, S.O. Suh & Gujjari, 2011, Trichosporon oleaginosus, Trichosporon sp. ATCC 20508, Trichosporon sp. ATCC 20509
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