STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEL26935.1PFAM: Anti-sigma-K factor rskA; InterPro IPR018764; KEGG: mtt:Ftrac_3317 anti-sigma K factor rska; PFAM: Anti-sigma K factor RskA; SPTR: Putative uncharacterized protein. (280 aa)    
Predicted Functional Partners:
AEL26934.1
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR007630:IPR014284; KEGG: mtt:Ftrac_3318 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-E factor heat shock and oxidative stress; TIGRFAM: RNA polymerase sigma-70.
 
 
 
 0.911
AEL27891.1
KEGG: chu:CHU_1802 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.636
AEL26933.1
Dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase; COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027:IPR004099:IPR006258; KEGG: mtt:Ftrac_3319 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase.
  
    0.622
AEL26487.1
Hypothetical protein; KEGG: mtt:Ftrac_3153 pkd domain containing protein; SPTR: Putative uncharacterized protein.
  
     0.571
AEL26800.1
KEGG: mtt:Ftrac_1792 membrane protein; SPTR: Putative uncharacterized protein.
  
     0.543
AEL26936.1
PFAM: Protein of unknown function (DUF2721); KEGG: psn:Pedsa_1226 hypothetical protein; SPTR: Cellulose-binding protein II.
 
     0.504
AEL25455.1
KEGG: mxa:MXAN_2242 putative lipoprotein; SPTR: Putative uncharacterized protein.
  
     0.500
AEL23970.1
KEGG: zpr:ZPR_3184 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.489
AEL27451.1
KEGG: mtt:Ftrac_1593 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.489
AEL25078.1
KEGG: sli:Slin_1885 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
     0.456
Your Current Organism:
Cyclobacterium marinum
NCBI taxonomy Id: 880070
Other names: C. marinum DSM 745, Cyclobacterium marinum DSM 745, Cyclobacterium marinum LMG 13164, Cyclobacterium marinum str. DSM 745, Cyclobacterium marinum strain DSM 745
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.