STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEL27509.1YceI family protein; PFAM: YceI-like domain; InterPro IPR007372; KEGG: zpr:ZPR_0535 hypothetical protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: Secreted protein; Belongs to the UPF0312 family. (192 aa)    
Predicted Functional Partners:
AEL27510.1
KEGG: rbi:RB2501_13524 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.936
AEL27511.1
KEGG: fjo:Fjoh_1778 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.908
AEL28289.1
KEGG: mtt:Ftrac_2116 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.786
AEL28071.1
KEGG: shg:Sph21_3661 regulatory protein MarR; SPTR: Putative uncharacterized protein.
  
     0.486
AEL28070.1
PFAM: Protein of unknown function (DUF3307); KEGG: fjo:Fjoh_2211 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.411
Your Current Organism:
Cyclobacterium marinum
NCBI taxonomy Id: 880070
Other names: C. marinum DSM 745, Cyclobacterium marinum DSM 745, Cyclobacterium marinum LMG 13164, Cyclobacterium marinum str. DSM 745, Cyclobacterium marinum strain DSM 745
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.