STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEL28321.1Heme-binding protein; PFAM: HEAT repeat; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155:IPR013427; KEGG: sli:Slin_6210 heme-binding protein; PFAM: PBS lyase HEAT-like repeat; SPTR: Heme-binding domain-containing protein; TIGRFAM: Putative haem-binding region. (1140 aa)    
Predicted Functional Partners:
AEL28609.1
Membrane-bound dehydrogenase domain protein; PFAM: Cytochrome c; InterPro IPR013428:IPR003088; KEGG: sli:Slin_3985 dehydrogenase; PFAM: Cytochrome c, class I; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: Putative membrane-bound dehydrogenase.
  
     0.758
AEL27950.1
PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR013428; KEGG: dfe:Dfer_4984 membrane-bound dehydrogenase domain protein; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: Putative membrane-bound dehydrogenase.
  
     0.754
AEL27114.1
TIGRFAM: putative membrane-bound dehydrogenase domain; InterPro IPR013428; KEGG: phe:Phep_0332 membrane-bound dehydrogenase domain-containing protein; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: Putative membrane-bound dehydrogenase.
  
     0.696
AEL27353.1
Hypothetical protein; PFAM: Trehalose utilisation; KEGG: sli:Slin_1261 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.653
AEL24945.1
Hypothetical protein; PFAM: Trehalose utilisation; KEGG: pbs:Plabr_3359 signal peptide domain-containing protein; SPTR: Putative uncharacterized protein.
 
     0.651
AEL28320.1
Heme-binding protein; PFAM: Cytochrome c; PBS lyase HEAT-like repeat; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR004155:IPR013427; KEGG: sli:Slin_6210 heme-binding protein; PFAM: PBS lyase HEAT-like repeat; SMART: PBS lyase HEAT-like repeat; SPTR: Heme-binding protein; TIGRFAM: Putative haem-binding region.
 
    
0.628
AEL27081.1
NHL repeat containing protein; PFAM: Trehalose utilisation; KEGG: psl:Psta_2160 NHL repeat containing protein; SPTR: Putative uncharacterized protein.
 
     0.580
AEL28322.1
PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819; KEGG: N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; SPTR: N-acylglucosamine 2-epimerase superfamily.
 
     0.531
AEL28610.1
PFAM: Xylose isomerase-like TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: sli:Slin_3986 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; SPTR: AP endonuclease, family 2.
 
     0.483
AEL25541.1
PFAM: Cytochrome c; Trehalose utilisation; PKD domain; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088; KEGG: cpi:Cpin_7275 PKD domain containing protein; PFAM: PKD; Cytochrome c, class I; SMART: PKD; SPTR: Transcriptional regulator, Crp/Fnr family.
 
    0.469
Your Current Organism:
Cyclobacterium marinum
NCBI taxonomy Id: 880070
Other names: C. marinum DSM 745, Cyclobacterium marinum DSM 745, Cyclobacterium marinum LMG 13164, Cyclobacterium marinum str. DSM 745, Cyclobacterium marinum strain DSM 745
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