STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM02543.1Putative transcriptional regulator; PFAM: Penicillinase repressor. (126 aa)    
Predicted Functional Partners:
AFM02542.1
Antirepressor regulating drug resistance protein; PFAM: BlaR1 peptidase M56.
 
  
 0.953
AFM05937.1
Copper chaperone; PFAM: Protein of unknown function (DUF2679); Heavy-metal-associated domain.
  
  
 0.729
AFM02544.1
PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
       0.440
AFM04237.1
PFAM: Gram-negative bacterial tonB protein.
 
     0.430
AFM05461.1
PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
     0.421
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.