STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM02545.1PFAM: GlcNAc-PI de-N-acetylase; TIGRFAM: bacillithiol biosynthesis deacetylase BshB1. (245 aa)    
Predicted Functional Partners:
bshC
Bacillithiol biosynthesis cysteine-adding enzyme BshC; PFAM: Uncharacterized protein conserved in bacteria (DUF2317); TIGRFAM: bacillithiol biosynthesis cysteine-adding enzyme BshC; Belongs to the BshC family.
 
   
 0.789
AFM06025.1
PFAM: Glycosyl transferases group 1; TIGRFAM: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA.
  
    0.770
AFM06377.1
PFAM: Protein of unknown function (DUF1094); Belongs to the UPF0403 family.
  
     0.684
AFM05709.1
PFAM: Protein of unknown function (DUF2480).
  
     0.594
AFM02544.1
PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
       0.588
AFM05089.1
Hypothetical protein.
  
     0.541
AFM03607.1
TIGRFAM: gliding motility-associated protein GldC.
  
     0.532
AFM06024.1
Bacillithiol system protein YtxJ; PFAM: Protein of unknown function (DUF2847); TIGRFAM: bacillithiol system protein YtxJ.
  
   
 0.515
AFM04914.1
Tellurite resistance protein TehB.
 
     0.465
AFM06198.1
PFAM: Protein of unknown function (DUF2911).
  
     0.421
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.