STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM02852.1Putative transcriptional regulator with HTH domain; PFAM: Divergent AAA domain. (222 aa)    
Predicted Functional Partners:
AFM02672.1
PFAM: Type I restriction modification DNA specificity domain.
  
    0.677
AFM04238.1
PFAM: Gram-negative bacterial tonB protein.
  
    0.610
AFM04463.1
Hypothetical protein.
  
     0.610
AFM04310.1
Hypothetical protein.
  
     0.586
AFM02673.1
PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family.
  
    0.582
AFM05468.1
T5orf172 domain-containing protein; PFAM: T5orf172 domain.
  
    0.582
AFM03056.1
Hypothetical protein.
  
     0.564
AFM05461.1
PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
  
    0.496
AFM02853.1
PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
       0.471
AFM05405.1
Hypothetical protein.
  
     0.470
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.