STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM03629.1ABC-type polysaccharide/polyol phosphate transport system, ATPase component; PFAM: ABC transporter. (423 aa)    
Predicted Functional Partners:
AFM03628.1
ABC-type polysaccharide/polyol phosphate export systems, permease component; PFAM: ABC-2 type transporter.
 
 0.997
AFM05861.1
ABC-type polysaccharide/polyol phosphate export systems, permease component; PFAM: ABC-2 type transporter.
 
 0.993
AFM02724.1
ABC-type polysaccharide/polyol phosphate transport system, ATPase component; PFAM: ABC transporter.
  
  
 
0.910
AFM04281.1
PFAM: Capsule polysaccharide biosynthesis protein.
  
  
 0.686
AFM02559.1
PFAM: Polysaccharide biosynthesis/export protein.
  
  
 0.597
AFM02794.1
PFAM: Polysaccharide biosynthesis/export protein.
  
  
 0.594
AFM03002.1
Putative amidophosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.
   
    0.537
AFM04286.1
PFAM: Glycosyl transferases group 1.
 
 
 0.457
AFM04288.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
 
 0.408
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.