STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM03678.1Hypothetical protein; PFAM: Domain of unknown function (DUF1768); TIGRFAM: conserved hypothetical protein, ribA/ribD-fused. (187 aa)    
Predicted Functional Partners:
AFM02623.1
TIGR02452 family protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2263); TIGRFAM: TIGR02452 family protein.
     0.881
AFM06204.1
Ubiquitin-protein ligase; PFAM: Ubiquitin-conjugating enzyme.
    
 0.798
AFM04170.1
PFAM: ATPase family associated with various cellular activities (AAA).
  
 
 
 0.763
AFM05490.1
PFAM: ADP-ribosylglycohydrolase.
     0.733
AFM03809.1
Hypothetical protein.
 
     0.730
AFM05495.1
PFAM: ATPase family associated with various cellular activities (AAA).
    
 
 0.715
AFM02632.1
TIGR02452 family protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2263); TIGRFAM: TIGR02452 family protein.
     0.672
AFM04847.1
PFAM: ADP-ribosylglycohydrolase.
     0.648
AFM05648.1
Putative phosphatase, C-terminal domain of histone macro H2A1 like protein; PFAM: Macro domain.
 
     0.605
AFM03001.1
Hypothetical protein.
  
     0.590
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.