STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM03757.1Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily. (649 aa)    
Predicted Functional Partners:
AFM03758.1
PFAM: Cytochrome oxidase assembly protein.
       0.697
AFM03792.1
Thiol-disulfide isomerase-like thioredoxin; PFAM: AhpC/TSA family.
  
     0.681
AFM03442.1
PFAM: Transmembrane exosortase (Exosortase_EpsH); TIGRFAM: exosortase family protein XrtF; exosortase/archaeosortase family protein.
  
     0.676
AFM02589.1
Hypothetical protein.
  
     0.592
AFM04186.1
Hypothetical protein.
  
     0.545
AFM02584.1
Hypothetical protein; Manually curated; non-canonical start codon.
  
     0.531
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.526
AFM05038.1
PFAM: Uncharacterized conserved protein (COG2071).
  
     0.507
AFM02662.1
Hypothetical protein.
  
     0.451
AFM05550.1
Hypothetical protein.
  
     0.437
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.