STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM03855.1PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor. (783 aa)    
Predicted Functional Partners:
AFM03854.1
Putative iron-regulated membrane protein.
 
  
 0.884
AFM05917.1
Fe2+-dicitrate sensor, membrane component; PFAM: FecR protein.
 
 
 0.766
AFM04100.1
Hypothetical protein.
 
 
 0.713
AFM03860.1
Hypothetical protein.
 
   
 0.646
AFM06127.1
Putative iron-regulated membrane protein.
 
  
 0.620
AFM04492.1
TonB-linked outer membrane protein, SusC/RagA family; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
  
  
 0.587
AFM04491.1
Hypothetical protein.
  
   
 0.571
AFM03859.1
TonB-linked outer membrane protein, SusC/RagA family; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
 
  
 0.538
AFM05807.1
Hypothetical protein.
 
  
 0.534
AFM03856.1
PFAM: NAD dependent epimerase/dehydratase family.
       0.496
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.