STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM03880.1TIR domain-containing protein; PFAM: TIR domain. (931 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.710
AFM03392.1
poly(ADP-ribose) polymerase-like protein; PFAM: Poly(ADP-ribose) polymerase catalytic domain.
  
     0.676
AFM06132.1
Muramidase (flagellum-specific); PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase.
  
     0.675
AFM04164.1
Muramidase (flagellum-specific); PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase.
  
     0.674
AFM02922.1
Muramidase (flagellum-specific); PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase.
  
     0.657
AFM05103.1
Hypothetical protein.
  
     0.655
AFM04633.1
PFAM: Tetratricopeptide repeat.
  
 
  0.582
AFM04777.1
Hypothetical protein.
  
     0.574
AFM03489.1
TIGRFAM: methyltransferase, FkbM family.
  
     0.555
AFM03879.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family.
   
   0.554
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.