STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM03889.1Putative ATPase; PFAM: ParB-like nuclease domain. (714 aa)    
Predicted Functional Partners:
AFM03888.1
Hypothetical protein.
       0.757
AFM05486.1
Hypothetical protein.
 
     0.739
AFM06274.1
Hypothetical protein.
 
     0.716
AFM05887.1
PFAM: Eco57I restriction endonuclease.
 
  
 0.708
AFM05868.1
Hypothetical protein.
  
     0.632
AFM03157.1
Putative RNA-binding protein, snRNP like protein; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA).
  
  
 0.624
AFM03723.1
Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase; Eco57I restriction endonuclease.
 
    0.624
AFM05198.1
TIGRFAM: conserved hypothetical protein (putative transposase or invertase).
  
     0.614
AFM03308.1
PFAM: Eco57I restriction endonuclease.
 
  
 0.601
AFM03522.1
Hypothetical protein.
  
     0.558
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.