STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM04071.1PFAM: RNA ligase. (242 aa)    
Predicted Functional Partners:
AFM04072.1
Putative kinase; PFAM: HD domain.
 
     0.881
AFM03701.1
TIGRFAM: bacteriocin biosynthesis cyclodehydratase domain; bacteriocin biosynthesis cyclodehydratase, SagC family.
  
     0.617
AFM03001.1
Hypothetical protein.
  
     0.568
AFM04070.1
Hypothetical protein.
       0.512
AFM05814.1
PFAM: Reverse transcriptase (RNA-dependent DNA polymerase).
  
     0.447
AFM03809.1
Hypothetical protein.
  
     0.439
AFM03901.1
Putative protein-tyrosine phosphatase; PFAM: Dual specificity phosphatase, catalytic domain.
  
     0.431
AFM02632.1
TIGR02452 family protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2263); TIGRFAM: TIGR02452 family protein.
  
     0.428
AFM02623.1
TIGR02452 family protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2263); TIGRFAM: TIGR02452 family protein.
  
     0.416
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.