STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM04131.1PFAM: Protein of unknown function (DUF3098). (89 aa)    
Predicted Functional Partners:
AFM03524.1
Hypothetical protein.
  
     0.775
AFM04308.1
Hypothetical protein.
  
     0.774
AFM05332.1
Hypothetical protein.
  
     0.774
AFM05878.1
Hypothetical protein.
  
     0.774
AFM04310.1
Hypothetical protein.
  
     0.773
AFM04762.1
Hypothetical protein.
  
     0.773
AFM04829.1
Hypothetical protein.
  
     0.773
AFM05139.1
Hypothetical protein.
  
     0.773
AFM04272.1
TIGRFAM: gliding motility associated protien GldN.
  
     0.771
AFM03729.1
Phosphoribosylanthranilate isomerase.
  
     0.770
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.