STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM04216.1ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family. (283 aa)    
Predicted Functional Partners:
AFM05919.1
ABC-type metal ion transport system, periplasmic component/surface adhesin; PFAM: Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family.
 
 0.997
AFM03637.1
ATPase component of Mn/Zn ABC-type transporter; PFAM: ABC transporter.
 0.995
AFM04689.1
ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family; Iron dependent repressor, metal binding and dimerisation domain.
 
 
0.892
AFM05782.1
Mn-dependent transcriptional regulator; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain.
  
 0.678
AFM04215.1
Hypothetical protein; PFAM: Antibiotic biosynthesis monooxygenase.
       0.533
AFM04217.1
PFAM: Eco47II restriction endonuclease.
       0.522
AFM04218.1
DNA-methyltransferase Dcm; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm).
       0.518
AFM05338.1
ABC-type (unclassified) transport system, ATPase component; PFAM: ABC transporter.
 
   
 0.411
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.