STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM04252.1ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter. (233 aa)    
Predicted Functional Partners:
AFM04253.1
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
       0.773
AFM03704.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
  
     0.764
AFM02791.1
ABC-type transport system involved in cytochrome c biogenesis, permease component; PFAM: CcmB protein.
 
     0.716
AFM03697.1
Hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
     0.702
AFM06111.1
Aminopeptidase N; PFAM: Peptidase family M1.
  
 
 0.690
AFM03288.1
Hypothetical protein.
  
     0.632
AFM03695.1
ABC-type transport system involved in cytochrome c biogenesis, permease component; PFAM: Cytochrome C assembly protein.
 
     0.597
AFM06058.1
ABC-type uncharacterized transport system, ATPase component; PFAM: ABC transporter.
 
     0.586
AFM04390.1
PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF.
 
     0.563
AFM02942.1
Hypothetical protein.
  
     0.535
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.