STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM04328.1PFAM: Protein of unknown function (DUF2874). (149 aa)    
Predicted Functional Partners:
AFM04329.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
   
 0.891
AFM04330.1
PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
 
  
 0.841
AFM04662.1
TROVE domain-containing protein; PFAM: TROVE domain.
  
     0.631
AFM04327.1
Hypothetical protein.
       0.562
AFM03792.1
Thiol-disulfide isomerase-like thioredoxin; PFAM: AhpC/TSA family.
  
 
   0.560
AFM03182.1
Hypothetical protein.
  
     0.490
AFM05634.1
PFAM: Tryptophan 2,3-dioxygenase.
  
     0.463
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
       0.452
AFM04178.1
Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c.
  
     0.412
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.