STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM04573.1Hypothetical protein. (273 aa)    
Predicted Functional Partners:
AFM04572.1
PFAM: MORN repeat variant.
 
     0.925
AFM04571.1
PFAM: SCO1/SenC.
 
     0.859
AFM03459.1
Hypothetical protein.
 
     0.779
AFM05441.1
Hypothetical protein.
 
    0.768
AFM05298.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase.
  
 
 0.620
AFM04259.1
Arylsulfatase A family protein; PFAM: Sulfatase.
 
     0.611
AFM04790.1
Cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme.
  
   
 0.588
AFM03458.1
PFAM: SCO1/SenC.
 
     0.573
AFM05946.1
PFAM: MORN repeat variant.
 
     0.568
AFM03962.1
PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; manually curated; non-canonical start codon.
  
    0.563
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.