STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM04598.1Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family. (689 aa)    
Predicted Functional Partners:
nuoH
NADH:ubiquinone oxidoreductase subunit 1 (chain H); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
       0.768
AFM05280.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; Tetratricopeptide repeat.
 
 
0.495
AFM02569.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
  
  
0.490
AFM05683.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
  
  
0.484
AFM06051.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
  
  
0.478
AFM04596.1
Hypothetical protein.
       0.462
AFM05578.1
Flagellar motor protein; PFAM: OmpA family.
  
 
0.451
AFM04562.1
LysM repeat-containing protein; PFAM: Transglycosylase SLT domain; LysM domain.
 
 
 
 0.436
AFM02548.1
Hypothetical protein; PFAM: Formylglycine-generating sulfatase enzyme.
  
    0.427
AFM03867.1
PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldJ.
  
    0.404
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.