STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM04705.1Hypothetical protein. (356 aa)    
Predicted Functional Partners:
AFM04704.1
PFAM: D12 class N6 adenine-specific DNA methyltransferase.
 
     0.948
AFM04703.1
DNA-methyltransferase Dcm; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm).
 
     0.852
AFM04702.1
Putative transcription factor, MBF1 like protein; PFAM: Helix-turn-helix.
       0.774
AFM03237.1
PFAM: D12 class N6 adenine-specific DNA methyltransferase.
 
     0.453
AFM04009.1
Putative Zn peptidase; PFAM: Domain of unknown function (DUF955).
 
     0.437
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.