STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM04915.1WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat. (999 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.710
AFM05868.1
Hypothetical protein.
  
     0.615
AFM05297.1
Hypothetical protein; PFAM: Caspase domain; Tetratricopeptide repeat.
 
 
 0.614
AFM06055.1
Hypothetical protein.
  
     0.592
AFM03009.1
Hypothetical protein; PFAM: Caspase domain.
  
 
  0.582
AFM03701.1
TIGRFAM: bacteriocin biosynthesis cyclodehydratase domain; bacteriocin biosynthesis cyclodehydratase, SagC family.
  
  0.580
AFM04729.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat.
  
     0.569
AFM04916.1
Hypothetical protein.
       0.568
AFM05521.1
Leucine Rich Repeat (LRR)-containing protein; PFAM: Miro-like protein; TIGRFAM: small GTP-binding protein domain.
  
 
 0.549
AFM04968.1
Hypothetical protein.
  
 
   0.541
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.