STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM05053.1PFAM: Tetratricopeptide repeat. (611 aa)    
Predicted Functional Partners:
AFM05683.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
 
  
 0.824
AFM06051.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
 
  
 0.817
AFM05280.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; Tetratricopeptide repeat.
 
  
 0.809
AFM06133.1
PFAM: Aerotolerance regulator N-terminal; CARDB; TIGRFAM: N-terminal double-transmembrane domain.
 
     0.786
AFM04134.1
Hypothetical protein.
  
   
 0.785
AFM05983.1
Hypothetical protein.
 
    0.776
AFM04457.1
Hypothetical protein.
  
     0.775
AFM05052.1
cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain.
       0.773
AFM03260.1
Hypothetical protein.
  
     0.771
AFM02829.1
Hypothetical protein.
  
     0.768
Your Current Organism:
Bernardetia litoralis
NCBI taxonomy Id: 880071
Other names: B. litoralis DSM 6794, Bernardetia litoralis DSM 6794, Flexibacter litoralis ATCC 23117, Flexibacter litoralis DSM 6794, Flexibacter litoralis IFO 15988
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.